Research

Tools for academic research See also the Document processing section

• awesome-research
• WebPlotDigitizer : A web based tool to extract data from plots, images, and maps

Document Processing

• draw.io: Flow chart and diagram maker.
• Microsoft designer: AI-generated cover designs.
• My Graph Paper: Templates for graph papers and notebooks.
• PDF24: 24 free PDF tools.
• SlidesGo: Free Google Slides and PowerPoint templates.
• Word templates: Microsoft Word templates.
• Typst : The new foundation for documents as an alternative to LaTeX.

Reference managers

• SciWheel: the online reference manager with browser, Google Doc, and MS Word plugins.
• Zotero: an open-source reference manager. See Zotero

Find Publications

• Google scholar
• PubMed central (PMC)
• Semantic scholar

Data source

General datasets

• Machine learning datasets : A list of the biggest machine learning datasets from across the web.
• Awesome-public-datasets
• Common Workflow Language
• Wikidata
• World Bank Open Data
• Registry of Research Data Repositories

Biology

• Awesome Bioinformatics
• Phylogeny.fr : Online phylogenic tree analysis
• Biomedical statistics
• Introduction to Bioimage Analysis

Systems biology models

• BioModels, SMBL format and generated code available.
• Virtual Metabolic Human
• Virtual Cell
• MetaNetX
• BiGG Models
• Bionumbers, biological numbers from various sources
• BRENDA
• Physical lens of the cell
• Human cell atlas

Pharmacology database

• Drugbank
• ChEMBL
• PharmGKB
• PubChem by NCBI.